Figure 5
From: Gene order in rosid phylogeny, inferred from pairwise syntenies among extant genomes

Extension to unequal gene complements. Handling pathgroups with unequal gene complement. Paths containing genes not in the median, such as gene 2 in the illustration, are "extended" by the sequential addition of vertices from extra genes until a vertex from a median gene in encountered. In the depicted example, this shows that there is a second, hidden, cycle involving 1 h and 3 t . In larger examples, this would affect the relative priority of this pathgroup. Whether or not there are hidden cycles is detected by a rapid search.